Image Analyst MKIIFunctions Glossary
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2D DFT Filter
2D DFT Filter Butterworth BP
2D DFT Filter Butterworth BP Tiled
2D Kernel Convolution
2D Median
2D Morphological Operator
2D Nonlinear Filter
2D Savitzky-Golay filter
Absolute Value
Advanced Segmentation
Advanced Segmentation Sep.Seed
Affine Transformation
Align Channels
Align Series (Image Stabilizer)
Align Tiled Channels
Align Tiled Series (Image Stabilizer)
Anisotropic Diffusion Filter
Attach Intensity Gating
Attach Overlay Image
Attach Overlay Text
Automatic ROI drawing
Blind Spectral Unmix with NMF
Calculate Spatial Moments
Calibration Wizard Parameters
Close
Copy
Copy ROIs from Other Image
Correct Intensity Jump
Correct Lens Distortion
Corss-correlation data
Corss-correlation image
Count Division and Cell Death
Count Object Colocalization
Create ROI
Create ROIs from Segments
Crop
Detect Nuclei Convolution
Differential Evolution Optimizer
Draw Model Mitochondrion
Draw Random Position Model Mitochondria
Erase All ROIs
Excel Window Command
Export
Fill Mask
FunctionOptions
Get Image Information
Get Linked Channel
Image Arithmetic
Image Arithmetic In Place
Image Arithmetic Single Frame
Inpaint Mask
Input
Lens Correction Optimization
Link
Load and Run Pipeline
Load ROIs
Mask Active ROI
Mask Borders
Mask Frames by Plot Values
Mask Images
Measure Object Intensity
Measure Object Morphology
Multi-Dimensional Open Information
Multi-Dimensional Open Stage Position
Multi-Dimensional Reload Channel
New Image
New Time Scale
Onset Image
Open File
Optical Flow
Options
Pipeline
Plot
Plot Correlation
Plot Intensities Corresponding to Segments
Plot Morphological Parameters of Segments
Plot Ratio
Plot Tracking Parameters
PMPI Calibration with [K+]ec steps and known [K+]ic and known kP
PMPI Complete Calibration
PMPI Complete Calibration with known kP
PMPI Short Calibration based on known potential during MDC and CDC
PMPI Short Calibration between known baseline and CDC
PMPI Short Calibration between known baseline and MDC
PMPI Short Calibration between known baseline and separately measured fP0
PMPI Short Calibration from Zero with fx=0
Potential calibration constants
Potential calibration error propagation
Potential calibration expert overrides
Projection of Vectors from a Point
Ratio
ReCount Division and Cell Death
Reevaluate Segments
Remove Blank Frames
Rename
Resample Image
ROI Classifiers
Run Membrane Potential Calibration
Save ROIs
Scalar Arithmetic
Scalar Arithmetic Multi
Sensor Noise Characteristics
Set Reference Image
Set Scaling/LUT
Set Segmentation Classifiers
Set Segmentation Intensity Classifiers
Simple 2D Cross-correlation
Simple Segmentation
Skeletonize
Spectral Unmix
Strip to Well Cell Count
Substitute Poisson Noise
Subtract Background
T or Z-project
Template Matching
Temporal Average Filter
Temporal Block Filter
Temporal Median Filter
Temporal Rolling Projection
Temporal Savitzky-Golay Filter
Thinness Ratio Optimization
Threshold
TMRM Complete Calibration
TMRM Complete Calibration with known kT
TMRM Short Calibration between known baseline and MDC or CDC
Track Objects
Truncate or Cut
Wait for All Inputs
Wiener filter
Windows Menu Command
Write Back Scaled Values
ΔF/F0
Image Analyst MKII Functions
Parameters:
Name Short Name Type Description
Name of the parameter Short name used when called from Mathematica integer,
real,
bool,
string
 
Description:
Each image processing function has an input of one or more image sequences, and a set of parameters shown in the above table.
Image processing functions in Image Analyst MKII can be accessed from the Main Menu items between "I/O" and "Special".
These functions are also accessible from the Pipeline.
All functions are accessible in a fully parametric form from Wolfram Research Mathematica. 'Short Names' are used when calling functions from Mathematica.



Select a function on the Right -------------->