2D DFT Filter

2D DFT Filter Butterworth BP

2D DFT Filter Butterworth BP Tiled

2D Kernel Convolution

2D Median

2D Morphological Operator

2D Nonlinear Filter

2D Savitzky-Golay filter

Absolute Value

Advanced Segmentation

Advanced Segmentation Sep.Seed

Affine Transformation

Align Channels

Align Series (Image Stabilizer)

Align Tiled Channels

Align Tiled Series (Image Stabilizer)

Anisotropic Diffusion Filter

Attach Intensity Gating

Attach Overlay Image

Attach Overlay Text

Automatic ROI drawing

Blind Spectral Unmix with NMF

Calculate Spatial Moments

Calibration Wizard Parameters

Close

Copy

Copy ROIs from Other Image

Correct Intensity Jump

Correct Lens Distortion

Corss-correlation data

Corss-correlation image

Count Division and Cell Death

Count Object Colocalization

Create ROI

Create ROIs from Segments

Crop

Detect Nuclei Convolution

Differential Evolution Optimizer

Draw Model Mitochondrion

Draw Random Position Model Mitochondria

Erase All ROIs

Excel Window Command

Export

Fill Mask

FunctionOptions

Get Image Information

Get Linked Channel

Image Arithmetic

Image Arithmetic In Place

Image Arithmetic Single Frame

Inpaint Mask

Input

Lens Correction Optimization

Link

Load and Run Pipeline

Load ROIs

Mask Active ROI

Mask Borders

Mask Frames by Plot Values

Mask Images

Measure Object Intensity

Measure Object Morphology

Multi-Dimensional Open Information

Multi-Dimensional Open Stage Position

Multi-Dimensional Reload Channel

New Image

New Time Scale

Onset Image

Open File

Optical Flow

Options

Pipeline

Plot

Plot Correlation

Plot Intensities Corresponding to Segments

Plot Morphological Parameters of Segments

Plot Ratio

Plot Tracking Parameters

PMPI Calibration with [K+]ec steps and known [K+]ic and known kP

PMPI Complete Calibration

PMPI Complete Calibration with known kP

PMPI Short Calibration based on known potential during MDC and CDC

PMPI Short Calibration between known baseline and CDC

PMPI Short Calibration between known baseline and MDC

PMPI Short Calibration between known baseline and separately measured fP0

PMPI Short Calibration from Zero with fx=0

Potential calibration constants

Potential calibration error propagation

Potential calibration expert overrides

Projection of Vectors from a Point

Ratio

ReCount Division and Cell Death

Reevaluate Segments

Remove Blank Frames

Rename

Resample Image

ROI Classifiers

Run Membrane Potential Calibration

Save ROIs

Scalar Arithmetic

Scalar Arithmetic Multi

Sensor Noise Characteristics

Set Reference Image

Set Scaling/LUT

Set Segmentation Classifiers

Set Segmentation Intensity Classifiers

Simple 2D Cross-correlation

Simple Segmentation

Skeletonize

Spectral Unmix

Strip to Well Cell Count

Substitute Poisson Noise

Subtract Background

T or Z-project

Template Matching

Temporal Average Filter

Temporal Block Filter

Temporal Median Filter

Temporal Rolling Projection

Temporal Savitzky-Golay Filter

Thinness Ratio Optimization

Threshold

TMRM Complete Calibration

TMRM Complete Calibration with known kT

TMRM Short Calibration between known baseline and MDC or CDC

Track Objects

Truncate or Cut

Wait for All Inputs

Wiener filter

Windows Menu Command

Write Back Scaled Values

ΔF/F0

Image Analyst MKII Functions

Name |
Short Name |
Type |
Description |

Name of the parameter | Short name used when called from
Mathematica |
integer, real, bool, string |

Each image processing
function has an input of one or more image sequences, and a set of
parameters shown in the above table.

Image processing functions in Image Analyst MKII can be accessed from the Main Menu items between "I/O" and "Special".

These functions are also accessible from the Pipeline.

All functions are accessible in a fully parametric form from* Wolfram Research* *Mathematica*.
'Short Names' are used when calling functions from *Mathematica*.

Select a function on the Right -------------->

Image processing functions in Image Analyst MKII can be accessed from the Main Menu items between "I/O" and "Special".

These functions are also accessible from the Pipeline.

All functions are accessible in a fully parametric form from

Select a function on the Right -------------->