2D DFT Filter
2D DFT Filter Butterworth BP
2D DFT Filter Butterworth BP Tiled
2D Kernel Convolution
2D Median
2D Morphological Operator
2D Nonlinear Filter
2D Savitzky-Golay filter
Absolute Value
Affine Transformation
Align Channels
Align Series (Image Stabilizer)
Align Tiled Channels
Align Tiled Series (Image Stabilizer)
Anisotropic Diffusion Filter
Attach Intensity Gating Image
Attach Overlay Image
Automatic ROI drawing
Band Pass filter Optimization
Blind Spectral Unmix with NMF
Calculate Simple Crossbleed
Calculate Spatial Moments
Calibration Wizard Parameters
Clear Segmentation Classifiers
Close Image Window
Copy Image Window
Copy ROIs from Other Image
Correct Intensity Jump
Correct Lens Distortion
Count Division and Cell Death
Count Object Colocalization
Create ROI
Create ROIs from Segments
Crop
Crop Image in Place
Crop Image to Segments
Cross-correlation data
Cross-correlation image
Detect Nuclei Convolution
Differential Evolution Optimizer
Distance from Segments
Draw Model Mitochondrion
Draw Random Position Model Mitochondria
EndIf
Erase All ROIs
Excel Window Command
Export
Fill Mask
Fill or Mask Active ROI
FLIPR Calibration with [K+]ec steps and known [K+]ic and known kP
FLIPR Complete Calibration
FLIPR Complete Calibration with known kP
FLIPR Complete Calibration with known kP - Goldman
FLIPR Complete Iterative Calibration
FLIPR Estimate PN
FLIPR Short Calibration based on known potential during MDC and CDC
FLIPR Short Calibration between known baseline and CDC
FLIPR Short Calibration between known baseline and MDC
FLIPR Short Calibration between known baseline and separately measured fP0
FLIPR Short Calibration from Zero with fx=0
FunctionOptions
Get Image Information
Get Linked Channel
If
If Greater Than Zero
Image Arithmetic (image-image math)
Image Arithmetic In Place
Image Arithmetic Single Frame
Inpaint Mask
Input
Invert
Lens Correction Optimization
Link Image Windows
Load and Run Pipeline
Load ROIs
Mask Borders
Mask Frames by Plot Values
Mask Images
Measure Object Intensity
Measure Object Morphology
Mirror or Rotate (new image)
Mirror or Rotate in Place
Multi-Dimensional Open Information
Multi-Dimensional Open Stage Position
Multi-Dimensional Reload Channel
New Image
New Time Scale
Onset Image
Open File
Optical Flow
Options
Pipeline
Pipeline Optimization
Pipeline Optimization Parameter
Plot
Plot Correlation (Colocalization)
Plot Intensities Corresponding to Segments
Plot Morphological Parameters of Segments
Plot Ratio
Plot ROI Dimensions
Plot Tracking Parameters
Potential calibration constants
Potential calibration error propagation
Potential calibration expert overrides
Projection of Vectors from a Point
Ratio
Ratiometric ROI Classifiers
ReCount Division and Cell Death
Reevaluate Segments
Remove Blank Frames
Rename
Resample Image
ROI Classifiers
Run Membrane Potential Calibration
Save ROIs
Scalar Arithmetic (image-value math)
Scalar Arithmetic Multi
Secondary Watershed Segmentation
Select
Select by Number
Sensor Noise Characteristics
Set Reference Image
Set Scaling/LUT
Set Segmentation Classifiers
Set Segmentation Intensity Classifiers
Shift Time Scale
Simple 2D Cross-correlation
Simple Segmentation
Skeletonize
Spectral Unmix
Strip to Well Cell Count
Substitute Poisson Noise
Subtract Background or Normalize
T or Z-project
Template Matching
Temporal Average Filter
Temporal Block Filter
Temporal Median Filter
Temporal Rolling Projection
Temporal Savitzky-Golay Filter
Thinness Ratio Optimization
Threshold
Time Stamp and Scale Bar
TMRM Complete Calibration
TMRM Complete Calibration with known kT
TMRM Complete Calibration with known kT and K-steps
TMRM Short Calibration between known baseline and MDC or CDC
Track Objects
Truncate or Cut
Wait for All Inputs
Watershed Segmentation
Wiener filter
Window Menu Command
Write Back Scaled Values
ΔF/F0

Set Segmentation Classifiers ( IASetSegmentationClassifiers )

Parameters:

Name	Short Name	Type	Description
Limit Type	type	string	Sets up criteria for minimal or maximal values
Volume	volume	integer	Volume in 3D, area in 2D. 0 for not checking
Surface	surface	integer	Surface in 3D, perimeter in 2D. 0 for not checking
Area	maxarea	integer	Maximal cross section area in 3D, area=volume in 2D. 0 for not checking
Perimeter	maxperimeter	integer	Perimeter of the maximal cross section in 3D, perimeter in 2D 0 for not checking
Diameter	maxdiameter	real	Farthest points of the maximal cross section. 0 for not checking
Shape factor	shapefactor	real	1 for disc, smaller for irregular shapes. 0 for not checking
Spherical shape factor	sphericalshapefactor	real	1 for sphere smaller for irregular shapes. 0 for not checking
Total Filament Length	totalfileamentlength	integer	0 for not checking
Total Branch Points	totalbranchpoints	integer	0 for not checking
Fiber Length	fiberlength	real	Provides estimate of length of filamentous objects. 0 for not checking
Fiber Breadth	fiberbreadth	real	Provides estimate of widths of filamentous objects. 0 for not checking
Distance to nearest neighbor	nearestneighbor	real	Calculates distances of centers of gravities of objects. 0 for not checking
Number of neighbors	numberofneighbors	integer	Neighbors are defined as objects with a distance of center of gravities less than the double of the sum of their diameters. Enter the desired min or max number of neighbors plus one or 0 for not checking

Description:

Adds classifiers to the image before segmentation. Set minimum and maximum values before segmentation by applying this function twice with "Min" and "Max" setting for Limit type. Data set by this function is not shown or visible. 3D qualifiers are obsolete and have no use. Neighbors are calculated only if other than zero value is set, this significantly increases processing time at large numbers of segments.
Mathematica usage:
No results for this function