Measure Object Intensity ( IAMeasureObjects )
Parameters:
| Name |
Short Name |
Type |
Description |
| Type |
type |
string |
|
| Write back means |
writeBackMeans |
boolean |
Fills up segments with the mean value |
| Constrain to active ROI |
constrainActiveROI |
boolean |
Calculates segment areas clipped with the active ROI in the segmented image. |
| Data/Text Window Output |
text |
boolean |
Shows segmentation results in text or Excel Data window. |
| Transpose Textual Output |
transpose |
boolean |
If yes segments are organized into columns if no then into rows. |
Description:
Reads out gray values from linked images (B) corresponding to segments of a segmented image (A) in a tabular format.
Write back: new images are created filling the segments with the mean intensity and with the SD of image B. The Channel number is incremented by 100 for the mean image and by 200 for the SD image.
Obsolete; superseded by Plot Intensities Corresponding to Segments.
Only Timestat is available for type.
Format: within each frame, for each segment the segment marker, mean intensity, intensity in the center, variance and number of pixels are printed.
The result image is the mask image. Use "Get Linked Images" functions to obtain other results of this function.
Use the Excel Data Window to record output.
Constrain to active ROI: a copy of the segmented image is masked to remove areas outside of the active ROI and this is used for readout.
Mathematica usage:
*types={3Dstat,Timestat}\nResult=\nFor 3DStat = {{ObjectNumber1,{MeanIntensityChannel1,CenterIntensityChannel1,VarianceChannel1},{...,...},...},...}\nFor TimeStat = {{{Object1Time1,{MeanIntensityChannel1,CenterIntensityChannel1,VarianceChannel1},{...,...},...},{Object1Time2,{...}},...},{{Object2Time1,{...}},...}}
Functions
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