| Name | Short Name | Type | Description |
| Crop to ROI (0 for active -1 for all) | roi | integer | The cropped image will have the rectangular boundaries of the ROI. If -1, the bounding rectangle of all ROIs will be used. |
| Crop all linked windows | cropalllinked | boolean | Crops all linked image windows creating a new set of linked image windows. |
| Crop all overlaid windows | cropalloverlaid | boolean | Crops those image windows that are shown as an overlay in the selected image window. This parameter has no effect if all linked windows are cropped. |
| Crop each ROI | cropeachROI | boolean | Cropping will be repeted for each ROI, resulting a new image for each ROI. |