Name |
Short Name |
Type |
Description |
Range definitions in time courses |
rangedef |
string |
Defines whether the ranges given below refer to frames or seconds in the recordings |
Baseline Range |
BaselineRange |
string |
Defines the range of the baseline (in the above defined time units). Longer baseline results more accurate calibration. |
K+ Steps Ranges |
KStepsRanges |
string |
Enter a list of range definitions for the duration of the K+-steps (in the above defined time units), including the MDC treatment. |
[K+]ec Steps (mM;mM) |
KStepsConcentrations |
string |
Extracellular (ec) K+ concentrations corresponding to the above defined steps, including MDC, in mM. Use the Wizard tab to calculate concentrations from added volumes. |
kP |
kP |
real |
Previously measured value of kp |
CDC Range |
CDCRange |
string |
The range of Complete Depolarization Cocktail addition (in the above defined time units). |
Take maximum of CDC Range |
CDCMax |
boolean |
If set yes, the maximum FLIPR intensity within the CDC Range is taken as zero calibration value (it error is the local SD of the range). Otherwise mean is calculated. |
fP0-fPX Allowed Range |
fP0MinusfPXRange |
string |
Trace selection criterion: the minimum and maximum allowed value of fP0-fPX |
fPX r^2 Min |
fpXr2Min |
real |
Trace selection criterion: the minimum allowed value of r^2 for the FLIPR-regression. |
Quality control by propagated error of baseline |
QCPMPrest |
boolean |
Removes traces where the estimated SE of baseline is greater than the threshold below. Requires error propagation. |
Maximum SE of baseline (mV) |
QCPMPrestMaxSE |
real |
Traces where the SE of resting ΔψP parameter is larger than this number are removed. |
PN |
PNway |
string |
Defines whether PN is calculated and used indepenedntly for each trace or a median value is used uniformly for all traces. In the latter case PN is calculated for each trace, and then the calibration is re-run using the median of the PN values for increased robustness. Note that errors in determination of PN are not propagated. |
Weights for fitting K-steps |
PNweights |
string |
Defines weighing least squares during nonlinear fit for colaculation of fpx and PN. |