Image processing pipelines in Image Analyst MKII
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Show color composite image

Parameters:
Name # Type Description
Channel #1 Color (Look Up Table) 1 string Look Up Table: "Grayscale", "Red", "Green", "Blue", "Pseudocolor", "Intensity Gated Pseudocolor", "Fire", "ROI color", "Off"
Channel #2 Color (Look Up Table) 2 string Look Up Table: "Grayscale", "Red", "Green", "Blue", "Pseudocolor", "Intensity Gated Pseudocolor", "Fire", "ROI color", "Off"
Channel #3 Color (Look Up Table) 3 string Look Up Table: "Grayscale", "Red", "Green", "Blue", "Pseudocolor", "Intensity Gated Pseudocolor", "Fire", "ROI color", "Off"
Channel #4 Color (Look Up Table) 4 string Look Up Table: "Grayscale", "Red", "Green", "Blue", "Pseudocolor", "Intensity Gated Pseudocolor", "Fire", "ROI color", "Off"
Show only composite image (minimize others) 5 boolean Yes executes output #1, No executes output #2.
Image intesity scaling 6 string The Nth output will be executed when the Nth value is selected here from a ;-separated list given below at "Possible selector values".
Scaling, Min percentile 7 real This percentile of the image histogram sets the intensity value where the minimum of the Look Up Table (LUT) is scaled. Use -1 to override this with fixed value set below at "Min value".
Scaling, Max percentile 8 real This percentile of the image histogram sets the intensity value where the maximum of the Look Up Table (LUT) is scaled. Use -1 to override this with fixed value set below at "Max value".
Show time stamp 9 boolean Turns on time stamps (set font in the Preferences Dialog/Misc tab).
Time stamp format 10 string Time will appear like this: "0 s", "0.0 s", "0.00 s", "0.000 s", "0000 ms", "00'00"", "00'00"00", "00h00min"
Show scale bar 11 boolean Turns on scale bar.
Scale bar unit 12 string Available units: "nm", "µm", "mm", "cm", "m".
Scale bar size 13 real Length of the scale bar in the units given above.
Description:
This pipeline scales the image with the Look Up Table (LUT) of choice, applies time stamp and scale bar. Set time stamp font in the Preferences Dialog/Misc tab


Version history
V2
Scale bar added. Handling of variable numbers of channels.
V3
Option added to choose fixed full scale with automatic detection of 8 or 16-bit images or percentile scaling.