Image processing pipelines in Image Analyst MKII
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FRET image (three channel)

Parameters:
Name # Type Description
Channel # of acceptor 1 integer Channel number associated with the image. Use Edit/Rename to view or change channel number.
Channel # of donor 2 integer Channel number associated with the image. Use Edit/Rename to view or change channel number.
Channel # of FRET 3 integer Channel number associated with the image. Use Edit/Rename to view or change channel number.
Background Level (percentile) 4 real Background is calculated as frame-by-frame mean of those pixels that are the darker than this percentile of image histogram for the duration of the entire recording.
Scaling of FRET image, minimum 5 real Pixel intensity for the minimum of the Look Up Table.
Scaling of FRET image, maximum 6 real Pixel intensity for the maximum of the Look Up Table.
Description:
Subtracts background, aligns channels, reduces noise and calculates a thee-channel FRET image.